PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_07962.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 259aa    MW: 28793.3 Da    PI: 4.5698
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_07962.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.7e-1852101255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               y+GVr +k +g+Wv+e+r+p   +k+ r++lg+f t e+Aa+a++ a+++l+g
  Rsa1.0_07962.1_g00002.1  52 IYRGVRLRK-SGKWVCEVREP---NKKSRIWLGTFKTVEMAARAHDVAALALRG 101
                              69******9.7******9998...347*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.1E-1451101IPR001471AP2/ERF domain
CDDcd000184.83E-3051111No hitNo description
SMARTSM003804.6E-2952115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-3052111IPR001471AP2/ERF domain
PROSITE profilePS5103221.41752109IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2152111IPR016177DNA-binding domain
PRINTSPR003674.0E-85364IPR001471AP2/ERF domain
PRINTSPR003674.0E-87591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MNTFPASTEM LGSENESPVT TVVGGDYCPR LAASCPKKPA GRKKFQETRH PIYRGVRLRK  60
SGKWVCEVRE PNKKSRIWLG TFKTVEMAAR AHDVAALALR GRGACLNFAD SAWRLRIPET  120
TCHKDIQKAA AEAALAFEAE KSDATMENGL SMEETTAVAS QAEVNDTTPD HGVDMEETIV  180
EAVFTEEQRE GFNMSKESTV EGAVNTEEQS KGFYMDEEWA FEMPTLLADM AAGMLLPPPS  240
VQWGHNDEFE EVDMNLWSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893090.0AC189309.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034C07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603191.11e-161PREDICTED: dehydration-responsive element-binding protein 1B-like
RefseqXP_013714098.11e-161PREDICTED: dehydration-responsive element-binding protein 1B-like
RefseqXP_013722613.11e-161PREDICTED: dehydration-responsive element-binding protein 1B-like
SwissprotQ9M0L01e-104DRE1A_ARATH; Dehydration-responsive element-binding protein 1A
TrEMBLQ5K6K41e-162Q5K6K4_BRAOL; CBF-like protein
STRINGBra010460.1-P1e-155(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.14e-88dehydration response element B1A